Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2024-01-29 16:10:18,343 [621] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2024-01-29 16:10:18,473 [621] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2024-01-29 16:10:18,478 [621] INFO pulse.unloader: ------------------------------------------------------------------------
2024-01-29 16:10:18,479 [621] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2024-01-29 16:10:18,479 [621] INFO pulse.unloader: ------------------------------------------------------------------------
2024-01-29 16:10:18,510 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:18,511 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:18,511 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:18,512 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:18,682 [621] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2024-01-29 16:10:19,491 [621] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2024-01-29 16:10:19,507 [621] INFO pulse.unloader:
Do an intial solve
2024-01-29 16:10:19,593 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:19,594 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:19,595 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:19,595 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:19,596 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:20,093 [621] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-01-29 16:10:20,167 [621] DEBUG UFL_LEGACY: Blocks of each mode:
2024-01-29 16:10:20,380 [621] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-01-29 16:10:59,098 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:59,099 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:59,099 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:59,100 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:59,100 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:10:59,287 [621] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-01-29 16:10:59,363 [621] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-01-29 16:10:59,555 [621] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-01-29 16:11:03,032 [621] INFO pulse.unloader:
Iteration: 0
2024-01-29 16:11:06,637 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-01-29 16:11:06,679 [621] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-01-29 16:11:10,919 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:10,923 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-01-29 16:11:10,968 [621] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-01-29 16:11:11,368 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:11,411 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:11,413 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:11,456 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:11,457 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:11,495 [621] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2024-01-29 16:11:11,646 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:11:11,647 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:11:11,648 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:11:11,648 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:11:11,649 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:11:11,992 [621] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-01-29 16:11:12,067 [621] DEBUG UFL_LEGACY: Blocks of each mode:
2024-01-29 16:11:12,275 [621] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-01-29 16:11:51,297 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:11:51,298 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:11:51,298 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:11:51,299 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:11:51,299 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-01-29 16:11:51,440 [621] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-01-29 16:11:51,515 [621] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-01-29 16:11:51,703 [621] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-01-29 16:11:55,193 [621] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2024-01-29 16:11:55,366 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:55,368 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:55,410 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:55,411 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:55,453 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:55,454 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:55,492 [621] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2024-01-29 16:11:55,504 [621] INFO pulse.unloader:
Residual: 0.011328623428538017
2024-01-29 16:11:55,505 [621] INFO pulse.unloader:
Iteration: 1
2024-01-29 16:11:55,678 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:55,679 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:55,721 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:55,722 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:55,763 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:55,765 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:55,805 [621] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2024-01-29 16:11:58,800 [621] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2024-01-29 16:11:58,973 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:58,974 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:59,017 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:59,018 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:59,059 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:59,060 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:59,098 [621] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2024-01-29 16:11:59,110 [621] INFO pulse.unloader:
Residual: 0.001698010214540199
2024-01-29 16:11:59,111 [621] INFO pulse.unloader:
Iteration: 2
2024-01-29 16:11:59,284 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:59,286 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:59,327 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:59,329 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:59,370 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:59,371 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:11:59,410 [621] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2024-01-29 16:12:02,403 [621] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2024-01-29 16:12:02,576 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:02,577 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:02,619 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:02,620 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:02,661 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:02,662 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:02,700 [621] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2024-01-29 16:12:02,711 [621] INFO pulse.unloader:
Residual: 0.0002592876931300245
2024-01-29 16:12:02,712 [621] INFO pulse.unloader:
Iteration: 3
2024-01-29 16:12:02,885 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:02,886 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:02,928 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:02,929 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:02,969 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:02,970 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:03,007 [621] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2024-01-29 16:12:06,003 [621] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2024-01-29 16:12:06,175 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:06,177 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:06,219 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:06,220 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:06,263 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:06,264 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:06,302 [621] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2024-01-29 16:12:06,313 [621] INFO pulse.unloader:
Residual: 3.931304295917144e-05
2024-01-29 16:12:06,314 [621] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2024-01-29 16:12:06,492 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:06,493 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:06,535 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:06,536 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:06,577 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-01-29 16:12:06,578 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()